News:
03/28/25 Haoye Yang from Human Genetics started his rotation in the lab. Welcome!
03/28/25 Jiannan Rui will join Biostatistics as a PhD student. Congratulations!
11/04/24 Linzhe Teng, a master student from Statistics, joined the lab. Welcome!
11/04/24 Chih-Hsuan graduated and joined St Jude children's research hospital as a biostatistician. Farewell and best wishes!
09/19/24 Peihong Zhang joined the lab as a joint postdoc with Dr. Chuan He. Welcome!
09/09/24 Gu Wang, a master student from NUS, started his visiting quarter at U Chicago. Welcome!
08/12/24 Shun will start his own lab at Sun Yet-Sen Memorial Hospital! Farewell and best wishes!
07/31/24 Ken Chen joined the lab as a joint postdoc with Dr. Chuan He. Welcome!
06/15/24 Xiaoyang will start her own lab at Chinese Academy of Science Center for Excellence in Molecular Cell Science! Best wishes!
06/05/24 Jianan Rui, a master student from Statistics, joined the lab. Welcome!
01/24/24 Yang Li from PME formally joined the lab. Welcome!
07/11/23 Zhiwei Jiang joined the lab from Chemistry. Welcome!
06/07/23 Xiaoyang's paper on RBFOX2 has been accepted to Nature Cell Biology. Good job!
06/03/23 Alvin and Carisa graduated from college. Farewell and best wishes!
05/17/23 We receive a new R01 from NHGRI in title of "Develop new bioinformatics infrastructures and computational tools for epitranscriptomics data".
05/16/23 Dr. Lei Zheng joined the lab as a postdoc, jointly with Dr. Chuan He' lab. Welcome!
04/30/23 Yifan's work with Dr. Xin He on factor models has been accepted to Nature Methods.
04/16/23 We received a pilot award from the Diabetes Research and Training Center.
12/08/22 Welcome, Kathryn Li, an undergraduate student, to join us for research in single cell prediXcan.
10/26/22 Welcome, Yiwei Ding, a graduate student from Chemistry, to join us for a rotation.
10/18/22 Our first HCA paper with Dr. Ernst Lengyel's team has been accepted to Cell Reports.
10/14/22 Welcome, Alvin Zhang, an undergraduate student in Biology and Statistics, to join us for research in single cell genomics.
09/23/22 Shun Liu's work with Dr. Weixin Tang's Lab on eTAM-seq has been accepted to Nature Biotechnology. Nicely done!
08/25/22 Welcome, Nick Feng, a master student from Biomedical informatics, to join us as a research assistant.
06/13/22 Welcome, Carisa Zeng, an undergraduate student, to join us with support from the BSCD Quantitative Biology summer fellowship. She will work on cell free DNA methylation for her thesis.
06/08/22 We received a Breast Cancer SPORE Developmental Research grant to collect more spatial transcriptomics data.
06/01/22 Yifan graduated and moved to GRAIL. Farewell and best wishes!
01/03/22 Welcome, Saideep Gona, a GGSB student, to join us for a rotation.
10/28/21 Shun Liu and Yong Peng's work with Lulu on SAC-seq has been accepted to Nature Biotechnology. Nice job!
09/16/21 We received an NHGRI R01 award to work on statistical methods for spatial transcriptomics data.
07/01/21 We received a CEGS award renewal from NHGRI to work on epitranscriptomics, together with amazing labs led by Drs. Chuan He, Bryan Dickson, Tao Pan, Peng Jin and Hongjun Sun .
03/30/21 Qi Zhan's collaborative work with Dr. Yang Li's lab, dmatch, has been published on Genome Research.
08/31/20 Welcome, Arpit Panda, a MSTP student, to join us for a rotation.
08/28/20 Tae moved to Microsoft! Farewell and best wishes!
07/20/20 Welcome, Allison Rodas, a first-year from the College, to join us for summer research with a Presidents' Scholarship.
07/17/20 Tae successfully defended her PhD thesis! Congratulations!
07/13/20 Tae's HIPPO paper has been accepted in Genome Biology. Perfectly done!
06/26/20 We received an NSF DMS award to work on statistical methods for intra-tumor heterogeneity studies.
04/20/20 Welcome, Shuwen Fang, a sophomore from the college, to our lab!
04/10/20 Shun's REPIC paper has been accepted in Genome Biology. Good job, Shun! REPIC is an online database for m6A sequencing data to integrate with epigenetic features, available at: http://repicmod.uchicago.edu/repic/.
02/05/20 We received a pilot grant from Breast Cancer SPORE Developmental Research Program Projects.
12/29/19 The lab welcome people who join us recently: Yong Peng (Postdoc joint with Prof. Chuan He in Department of Chemistry), Jovian Yu (Fellow Physician in Hematology/Oncology), Chih-Hsuan Wu (PhD Student in Statistics) and Yuguan Wang (MS Student in Statistics).
12/12/19 Scott's RADAR paper has been accepted in Genome Biology. Good job, Scott!
06/21/19 We received a Seed Network for Human Cell Atlas grant from Chan Zuckerberg Institute with Basu Group and Lengyel Group.
04/15/19 Kaiqian Zhang is accepted into Computational Biology PhD program at Princeton. Farewell and good luck, Kaiqian!
04/15/19 Qi Zhan is accepted into GGSB program at UChicago and will become a graduate student in the lab in Fall 2019.
02/19/19 Mengjie received Sloan Research Fellowship in Computational and Evolutionary Molecular Biology.
01/05/19 Xiaoyang came to the lab as the second postdoc joint with Prof. Chuan He in Chemistry.
12/18/18 We received an Epitranscriptome Pilot grant from U of Chicago Comprehensive Cancer Center.
10/23/18 Our paper with Xiang Zhou Group on scRNA-seq imputation is published on Genome Biology.
05/06/18 Qi joined the lab as a summer intern with support from Hodson Fellowship.
02/26/18 Our paper with Perou lab on metastatic breast cancer is now on Journal of Clinical Investigation.
01/05/18 Shun came to the lab as a postdoc joint with Prof. Chuan He in Chemistry.
08/29/17 Yifan joined the lab from Biophysics.
08/01/17 We received an R01 from NIGMS on single cell statistical methods development.
07/27/17 Kaiqian joined the lab as a research assistant.
07/24/17 Tae joined the lab as a research assistant.
03/15/17 Our paper on copy number calling from large scale exome sequencing dataset is accepted by Genome Biology.
12/20/16 Mengjie moved her lab to Chicago.
03/28/25 Haoye Yang from Human Genetics started his rotation in the lab. Welcome!
03/28/25 Jiannan Rui will join Biostatistics as a PhD student. Congratulations!
11/04/24 Linzhe Teng, a master student from Statistics, joined the lab. Welcome!
11/04/24 Chih-Hsuan graduated and joined St Jude children's research hospital as a biostatistician. Farewell and best wishes!
09/19/24 Peihong Zhang joined the lab as a joint postdoc with Dr. Chuan He. Welcome!
09/09/24 Gu Wang, a master student from NUS, started his visiting quarter at U Chicago. Welcome!
08/12/24 Shun will start his own lab at Sun Yet-Sen Memorial Hospital! Farewell and best wishes!
07/31/24 Ken Chen joined the lab as a joint postdoc with Dr. Chuan He. Welcome!
06/15/24 Xiaoyang will start her own lab at Chinese Academy of Science Center for Excellence in Molecular Cell Science! Best wishes!
06/05/24 Jianan Rui, a master student from Statistics, joined the lab. Welcome!
01/24/24 Yang Li from PME formally joined the lab. Welcome!
07/11/23 Zhiwei Jiang joined the lab from Chemistry. Welcome!
06/07/23 Xiaoyang's paper on RBFOX2 has been accepted to Nature Cell Biology. Good job!
06/03/23 Alvin and Carisa graduated from college. Farewell and best wishes!
05/17/23 We receive a new R01 from NHGRI in title of "Develop new bioinformatics infrastructures and computational tools for epitranscriptomics data".
05/16/23 Dr. Lei Zheng joined the lab as a postdoc, jointly with Dr. Chuan He' lab. Welcome!
04/30/23 Yifan's work with Dr. Xin He on factor models has been accepted to Nature Methods.
04/16/23 We received a pilot award from the Diabetes Research and Training Center.
12/08/22 Welcome, Kathryn Li, an undergraduate student, to join us for research in single cell prediXcan.
10/26/22 Welcome, Yiwei Ding, a graduate student from Chemistry, to join us for a rotation.
10/18/22 Our first HCA paper with Dr. Ernst Lengyel's team has been accepted to Cell Reports.
10/14/22 Welcome, Alvin Zhang, an undergraduate student in Biology and Statistics, to join us for research in single cell genomics.
09/23/22 Shun Liu's work with Dr. Weixin Tang's Lab on eTAM-seq has been accepted to Nature Biotechnology. Nicely done!
08/25/22 Welcome, Nick Feng, a master student from Biomedical informatics, to join us as a research assistant.
06/13/22 Welcome, Carisa Zeng, an undergraduate student, to join us with support from the BSCD Quantitative Biology summer fellowship. She will work on cell free DNA methylation for her thesis.
06/08/22 We received a Breast Cancer SPORE Developmental Research grant to collect more spatial transcriptomics data.
06/01/22 Yifan graduated and moved to GRAIL. Farewell and best wishes!
01/03/22 Welcome, Saideep Gona, a GGSB student, to join us for a rotation.
10/28/21 Shun Liu and Yong Peng's work with Lulu on SAC-seq has been accepted to Nature Biotechnology. Nice job!
09/16/21 We received an NHGRI R01 award to work on statistical methods for spatial transcriptomics data.
07/01/21 We received a CEGS award renewal from NHGRI to work on epitranscriptomics, together with amazing labs led by Drs. Chuan He, Bryan Dickson, Tao Pan, Peng Jin and Hongjun Sun .
03/30/21 Qi Zhan's collaborative work with Dr. Yang Li's lab, dmatch, has been published on Genome Research.
08/31/20 Welcome, Arpit Panda, a MSTP student, to join us for a rotation.
08/28/20 Tae moved to Microsoft! Farewell and best wishes!
07/20/20 Welcome, Allison Rodas, a first-year from the College, to join us for summer research with a Presidents' Scholarship.
07/17/20 Tae successfully defended her PhD thesis! Congratulations!
07/13/20 Tae's HIPPO paper has been accepted in Genome Biology. Perfectly done!
06/26/20 We received an NSF DMS award to work on statistical methods for intra-tumor heterogeneity studies.
04/20/20 Welcome, Shuwen Fang, a sophomore from the college, to our lab!
04/10/20 Shun's REPIC paper has been accepted in Genome Biology. Good job, Shun! REPIC is an online database for m6A sequencing data to integrate with epigenetic features, available at: http://repicmod.uchicago.edu/repic/.
02/05/20 We received a pilot grant from Breast Cancer SPORE Developmental Research Program Projects.
12/29/19 The lab welcome people who join us recently: Yong Peng (Postdoc joint with Prof. Chuan He in Department of Chemistry), Jovian Yu (Fellow Physician in Hematology/Oncology), Chih-Hsuan Wu (PhD Student in Statistics) and Yuguan Wang (MS Student in Statistics).
12/12/19 Scott's RADAR paper has been accepted in Genome Biology. Good job, Scott!
06/21/19 We received a Seed Network for Human Cell Atlas grant from Chan Zuckerberg Institute with Basu Group and Lengyel Group.
04/15/19 Kaiqian Zhang is accepted into Computational Biology PhD program at Princeton. Farewell and good luck, Kaiqian!
04/15/19 Qi Zhan is accepted into GGSB program at UChicago and will become a graduate student in the lab in Fall 2019.
02/19/19 Mengjie received Sloan Research Fellowship in Computational and Evolutionary Molecular Biology.
01/05/19 Xiaoyang came to the lab as the second postdoc joint with Prof. Chuan He in Chemistry.
12/18/18 We received an Epitranscriptome Pilot grant from U of Chicago Comprehensive Cancer Center.
10/23/18 Our paper with Xiang Zhou Group on scRNA-seq imputation is published on Genome Biology.
05/06/18 Qi joined the lab as a summer intern with support from Hodson Fellowship.
02/26/18 Our paper with Perou lab on metastatic breast cancer is now on Journal of Clinical Investigation.
01/05/18 Shun came to the lab as a postdoc joint with Prof. Chuan He in Chemistry.
08/29/17 Yifan joined the lab from Biophysics.
08/01/17 We received an R01 from NIGMS on single cell statistical methods development.
07/27/17 Kaiqian joined the lab as a research assistant.
07/24/17 Tae joined the lab as a research assistant.
03/15/17 Our paper on copy number calling from large scale exome sequencing dataset is accepted by Genome Biology.
12/20/16 Mengjie moved her lab to Chicago.
